Package ‘ WGCNA ’ March 28 , 2015
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چکیده
March 28, 2015 Version 1.46 Date 2015-03-28 Title Weighted Correlation Network Analysis Author Peter Langfelder and Steve Horvath with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang Maintainer Peter Langfelder Depends R (>= 3.0), dynamicTreeCut (>= 1.62), fastcluster Imports stats, grDevices, utils, matrixStats (>= 0.8.1), Hmisc, impute, splines, foreach, doParallel, reshape, preprocessCore, survival, parallel, GO.db, AnnotationDbi Suggests org.Hs.eg.db, org.Mm.eg.db, infotheo, entropy, minet ZipData no License GPL (>= 2) Description Functions necessary to perform Weighted Correlation Network Analysis on highdimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
منابع مشابه
Package ‘ ASSET ’ March 28 , 2017
March 28, 2017 Title An R package for subset-based association analysis of heterogeneous traits and subtypes Version 1.12.0 Date 2015-06-01 Author Samsiddhi Bhattacharjee, Nilanjan Chatterjee and William Wheeler Description An R package for subset-based analysis of heterogeneous traits and subtypes. Maintainer William Wheeler Depends MASS, msm, rmeta, mvtnorm, tmvnsim Sugg...
متن کاملTutorial for the WGCNA package for R II. Consensus network analysis of liver expression data, female and male mice 4. Relating consensus modules to external microarray sample information and exporting network analysis results
# Display the current working directory getwd(); # If necessary, change the path below to the directory where the data files are stored. # "." means current directory. On Windows use a forward slash / instead of the usual \. workingDir = "."; setwd(workingDir); # Load the WGCNA package library(WGCNA) # The following setting is important, do not omit. options(stringsAsFactors = FALSE); # Load th...
متن کاملPackage ‘ adehabitat ’ March 27 , 2015
March 27, 2015 Version 1.8.17 Date 2015-03-27 Title Analysis of Habitat Selection by Animals Author Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe Maintainer Clement Calenge Depends R (>= 2.10.0), ade4, tkrplot, shapefiles, sp, graphics Suggests spatstat, MASS, CircStats Description A collection of tools for the analysis...
متن کاملIdentify the signature genes for diagnose of uveal melanoma by weight gene co-expression network analysis.
AIM To identify and understand the relationship between co-expression pattern and clinic traits in uveal melanoma, weighted gene co-expression network analysis (WGCNA) is applied to investigate the gene expression levels and patient clinic features. Uveal melanoma is the most common primary eye tumor in adults. Although many studies have identified some important genes and pathways that were re...
متن کاملPackage ‘ qtl ’ March 5 , 2015
A starting point . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 add.cim.covar . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10 add.threshold . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11 addcovarint . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 addint . ...
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تاریخ انتشار 2015